PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr010433.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family GRAS
Protein Properties Length: 463aa    MW: 51734.7 Da    PI: 5.3683
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr010433.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS292.89.3e-90664583374
         GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100
                  +lL+ecA+avs++d +++++lL+ l+elasp+gd  q+la+yf++AL  + ++s+ ++yk+l++ ++++++ +++ +    f+e+sP+ +f+h++ N 
  Pbr010433.1  66 RLLMECARAVSEKDSSKINHLLWMLNELASPYGDFEQKLASYFLQALFCKATDSGLRCYKTLTSVAEKSHSFDSARKLILKFQELSPWTTFGHVASNG 163
                  79************************************************************9999985554444444445***************** PP

         GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvl.vakrledleleeLrvk 197
                  aIlea+ege+++HiiD++ + ++QWp+Ll+aLa+R++++p+l++T+v+  +s  k  ++e+g+r++kfA+ +gvpfe++v+   ++l +l+ e+L v+
  Pbr010433.1 164 AILEALEGETKLHIIDISNTLCTQWPTLLEALATRNDETPHLKLTVVVT-ASIVKSLMKEIGQRMEKFARLMGVPFEIKVIsGLNNLGQLTKEDLGVH 260
                  *************************************************.5579999***********************95567************* PP

         GRAS 198 pgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh.nse...sFlerflealeyysalfdsleaklpreseerikvErellg 291
                  ++Ea+aVn++ +l r+      +++ r +v+++++sl+P+vv+vve+ead+ +s+   +F++ f e+l++y+  fd+le+++ ++s++r ++Ere++ 
  Pbr010433.1 261 EDEAIAVNCIGALRRVE-----VAE-RGAVIRMFQSLRPRVVTVVEEEADLfSSSvndDFVKYFEECLRFYTLYFDMLEESFVPTSNDRLMLERECM- 351
                  ***************97.....344.789********************9965557779************************************65. PP

         GRAS 292 reivnvvacegaerr........erhe....tlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrve...........ee...sgslvlgWk 363
                  r+i  v+ c + ++         er+e    + ++W++rl++a F+pv +s+++++++k+ll+++   g+ +            ee   +  l+l+Wk
  Pbr010433.1 352 RSIIRVLGCDHHDHDdhknggecERRExxxxRGNQWSDRLKAA-FSPVGFSDDVVDDVKALLKRYR-AGWALVlppqgggggggEEdidQTGLYLTWK 447
                  7888999998765431112222233331112568******865.**********************.667776556666666652167699999**** PP

         GRAS 364 drpLvsvSaWr 374
                  ++p v++S W+
  Pbr010433.1 448 EEPAVWASIWK 458
                  **********8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098544.90338425IPR005202Transcription factor GRAS
PfamPF035143.2E-8766458IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 463 aa     Download sequence    Send to blast
MDISLFSPNK EANFLQQYSN QIKINGLAAA IDMQSTNQQT QNSHTSTSRS SGSSEPCPAG  60
TKWASRLLME CARAVSEKDS SKINHLLWML NELASPYGDF EQKLASYFLQ ALFCKATDSG  120
LRCYKTLTSV AEKSHSFDSA RKLILKFQEL SPWTTFGHVA SNGAILEALE GETKLHIIDI  180
SNTLCTQWPT LLEALATRND ETPHLKLTVV VTASIVKSLM KEIGQRMEKF ARLMGVPFEI  240
KVISGLNNLG QLTKEDLGVH EDEAIAVNCI GALRRVEVAE RGAVIRMFQS LRPRVVTVVE  300
EEADLFSSSV NDDFVKYFEE CLRFYTLYFD MLEESFVPTS NDRLMLEREC MRSIIRVLGC  360
DHHDHDDHKN GGECERREXX XXRGNQWSDR LKAAFSPVGF SDDVVDDVKA LLKRYRAGWA  420
LVLPPQGGGG GGGEEDIDQT GLYLTWKEEP AVWASIWKPS AN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A5e-28684588375GRAS family transcription factor containing p
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009339230.10.0PREDICTED: protein SHORT-ROOT-like
SwissprotQ9SZF71e-143SHR_ARATH; Protein SHORT-ROOT
TrEMBLM5XBH60.0M5XBH6_PRUPE; Uncharacterized protein
STRINGPOPTR_0017s05450.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF129734106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37650.11e-138GRAS family protein