PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

Plant Transcription Factor Database

v4.0

Previous version: v3.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr010433.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

GRAS

Protein Properties

Length: 463aa MW: 51734.7 Da PI: 5.3683

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr010433.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	292.8	9.3e-90	66	458	3	374
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100 +lL+ecA+avs++d +++++lL+ l+elasp+gd q+la+yf++AL + ++s+ ++yk+l++ ++++++ +++ + f+e+sP+ +f+h++ N Pbr010433.1 66 RLLMECARAVSEKDSSKINHLLWMLNELASPYGDFEQKLASYFLQALFCKATDSGLRCYKTLTSVAEKSHSFDSARKLILKFQELSPWTTFGHVASNG 163 79**********************************************************9999985554444444445************* PP GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvl.vakrledleleeLrvk 197 aIlea+ege+++HiiD++ + ++QWp+Ll+aLa+R++++p+l++T+v+ +s k ++e+g+r++kfA+ +gvpfe++v+ ++l +l+ e+L v+ Pbr010433.1 164 AILEALEGETKLHIIDISNTLCTQWPTLLEALATRNDETPHLKLTVVVT-ASIVKSLMKEIGQRMEKFARLMGVPFEIKVIsGLNNLGQLTKEDLGVH 260 *********************************************.5579999*******************95567********* PP GRAS 198 pgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh.nse...sFlerflealeyysalfdsleaklpreseerikvErellg 291 ++Ea+aVn++ +l r+ +++ r +v+++++sl+P+vv+vve+ead+ +s+ +F++ f e+l++y+ fd+le+++ ++s++r ++Ere++ Pbr010433.1 261 EDEAIAVNCIGALRRVE-----VAE-RGAVIRMFQSLRPRVVTVVEEEADLfSSSvndDFVKYFEECLRFYTLYFDMLEESFVPTSNDRLMLERECM- 351 ***********97.....344.789****************9965557779********************************65. PP GRAS 292 reivnvvacegaerr........erhe....tlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrve...........ee...sgslvlgWk 363 r+i v+ c + ++ er+e + ++W++rl++a F+pv +s+++++++k+ll+++ g+ + ee + l+l+Wk Pbr010433.1 352 RSIIRVLGCDHHDHDdhknggecERRExxxxRGNQWSDRLKAA-FSPVGFSDDVVDDVKALLKRYR-AGWALVlppqgggggggEEdidQTGLYLTWK 447 7888999998765431112222233331112568**865.******************.667776556666666652167699999 PP GRAS 364 drpLvsvSaWr 374 ++p v++S W+ Pbr010433.1 448 EEPAVWASIWK 458 ********8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	44.903	38	425	IPR005202	Transcription factor GRAS
Pfam	PF03514	3.2E-87	66	458	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 463 aa Download sequence Send to blast
MDISLFSPNK EANFLQQYSN QIKINGLAAA IDMQSTNQQT QNSHTSTSRS SGSSEPCPAG 60 TKWASRLLME CARAVSEKDS SKINHLLWML NELASPYGDF EQKLASYFLQ ALFCKATDSG 120 LRCYKTLTSV AEKSHSFDSA RKLILKFQEL SPWTTFGHVA SNGAILEALE GETKLHIIDI 180 SNTLCTQWPT LLEALATRND ETPHLKLTVV VTASIVKSLM KEIGQRMEKF ARLMGVPFEI 240 KVISGLNNLG QLTKEDLGVH EDEAIAVNCI GALRRVEVAE RGAVIRMFQS LRPRVVTVVE 300 EEADLFSSSV NDDFVKYFEE CLRFYTLYFD MLEESFVPTS NDRLMLEREC MRSIIRVLGC 360 DHHDHDDHKN GGECERREXX XXRGNQWSDR LKAAFSPVGF SDDVVDDVKA LLKRYRAGWA 420 LVLPPQGGGG GGGEEDIDQT GLYLTWKEEP AVWASIWKPS AN*

Sequence ? help Back to Top

Protein Sequence Length: 463 aa Download sequence Send to blast

MDISLFSPNK EANFLQQYSN QIKINGLAAA IDMQSTNQQT QNSHTSTSRS SGSSEPCPAG  60
TKWASRLLME CARAVSEKDS SKINHLLWML NELASPYGDF EQKLASYFLQ ALFCKATDSG  120
LRCYKTLTSV AEKSHSFDSA RKLILKFQEL SPWTTFGHVA SNGAILEALE GETKLHIIDI  180
SNTLCTQWPT LLEALATRND ETPHLKLTVV VTASIVKSLM KEIGQRMEKF ARLMGVPFEI  240
KVISGLNNLG QLTKEDLGVH EDEAIAVNCI GALRRVEVAE RGAVIRMFQS LRPRVVTVVE  300
EEADLFSSSV NDDFVKYFEE CLRFYTLYFD MLEESFVPTS NDRLMLEREC MRSIIRVLGC  360
DHHDHDDHKN GGECERREXX XXRGNQWSDR LKAAFSPVGF SDDVVDDVKA LLKRYRAGWA  420
LVLPPQGGGG GGGEEDIDQT GLYLTWKEEP AVWASIWKPS AN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	5e-28	68	458	8	375	GRAS family transcription factor containing p
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009339230.1	0.0	PREDICTED: protein SHORT-ROOT-like
Swissprot	Q9SZF7	1e-143	SHR_ARATH; Protein SHORT-ROOT
TrEMBL	M5XBH6	0.0	M5XBH6_PRUPE; Uncharacterized protein
STRING	POPTR_0017s05450.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1297	34	106

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37650.1	1e-138	GRAS family protein